• User Manual v.1.5
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  • User Manual v.1.5
    • Introduction
    • Installation
    • Command Line Arguments
      • Load - Import
        • Load Fasta
        • Load Blast Results
        • Load Annotations
        • Load InterProScan Results
        • Load Project
      • Analysis
        • CloudBlast
        • Local Blast
        • CloudInterProScan
        • EBI InterProScan
        • GO Mapping
        • GO Annotation
        • EC-Code Mapping
        • GO-Slim
        • Charts and Statistics
      • Save - Export
        • Save Log File
        • Save Longest Open Reading Frame
        • Save Sequence Table
        • Save Project
        • Export Annotations
        • Create PDF Report
        • Generic Data Export
      • Other
        • Cloud Unit Balance
        • Workspace Location
        • Create Key File
        • Show License Info
        • Create Properties File
        • Enzyme Data
        • Gene Ontology Structure
        • Extract Sequence Data from Reference
        • Name Prefix for Outputs
        • Properties File
        • Temporary File Location
    • Quickstart
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Analysis

TitleArgumentShort Description
Charts and Statistics

-statistics

Create charts for the data provided.

GO-Slim

-goslim

Generalize GO annotations with GO-Slim.

EC-Code Mapping

-ecmapping

Map GOs to EC-Codes.

GO Annotation

-annotation

Run GO Annotation.

GO Mapping

-mapping

Run GO Mapping.

EBI InterProScan

-ips

Run EBI InterProScan

Local Blast

-localblast

Run Blast on the local machine.

CloudInterProScan

-cloudips

Run CloudInterProScan.

CloudBlast

-cloudblast

Run CloudBlast.

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