Description | The option -exportgeneric allows exporting the data obtained for each sequence into a tabular
text file. The resulting file contains one line per sequence, while the columns can be customized. The
corresponding settings in the properties file (GenericExportParameters) determine how
columns and items are separated and which data should be exactly exported.
Column and item separators can be defined as a comma, semicolon, tabulator, whitespace, or vertical bar. There are 54 different items available, they can be grouped as follows: General Sequence information such as the sequence name or its length.
seq_name, seq_desc, seq_data, seq_length Summarized Blast information like the total number of blast hits.
blast_hit_count, blast_min_eval, blast_sim_mean Specific information about each Blast hit such as its hit description, length, e-value or alignment length.
blast_hits_desc, blast_hits_tax, blast_hits_eval, blast_hits_length, blast_hits_alignlength
blast_hits_pos, blast_hits_sim, blast_hits_hsphit, blast_hits_query, blast_hits_hspcount
blast_hits_frame, blast_hits_geneid, blast_hits_acc, blast_hits_score Specific information about the top blast hit (highest bit score).
blast_tophit_desc, blast_tophit_tax, blast_tophit_eval, blast_tophit_length
blast_tophit_alignlength, blast_tophit_pos, blast_tophit_sim, blast_tophit_hsphit
blast_tophit_query, blast_tophit_hspcount, blast_tophit_frame, blast_tophit_geneid
blast_tophit_acc, blast_tophit_score All GO Mapping candidate GO terms and evidence codes.
mapping_genename, mapping_tax, mapping_xref, mapping_xref_db
mapping_goid, mapping_goname, mapping_gocategory Annotated GO terms and enzyme codes.
annot_count, annot_goid, annot_goterm, annot_gocategory, enzyme_code, enzyme_name Detailed information about InterPro results like obtained domains, families as well as GO terms.
ips_acc, ips_type, ips_name, ips_sig, ips_goid, ips_goname, ips_gocategory
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